http://iscoresports.com/

I know this has been suggested, I play on a Rec Softball team and we would like to keep the book, unfortunately all 10 guys are in the field for the other teams at bats. I would love an option to skip the Half inning and just be able to enter the number of runs the team scored in that half inning.

Also I tried to make some edits after the game with runners, and it would not allow me to change anything except how they reached that base. For example a man was on Second and the sac fly should have adv him to third but the scorer mislabeled it as Held. I tried to advance him after the game, as he should have scored on the next play but the base runner was missing.

Use Misc -> End Inning and it actually does end the half inning.

You can not change the base a runner made it to post game, only the way they got there. It is important to make sure you get the bases correct for each runner as the scorekeeper.

Is there a way to end the half inning but put the number of runs the team scored in?

Answered this in your other post with the same question.