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Runner on 2nd base, less than two outs. Batter lines into double play. Batter out L-4, runner at 2nd out 4-6 (snap throw to short to get the runner diving back). How do I score that? Line Drive 4-6, runner out double play? Would that give the out and the assist to 2nd baseman? Just curious. Thanks!

That's how I do it.

Yes, that is the way to score it.